TigerFISH for fungal genomes

[SanderSMFISH]

Hi,

First of all what a great tool and easy to use! I am eager to extend the usage of your amazing tool on somewhat more obscure fungal genomes.

1. However, I am worried about repeat identification? Do you think the TigerFISH will do a good job in identifying repeats as shown for the human genome in your recent connected biorxv publication?

2. I was also wondering whether you could give some advice on which parameters should be altered for using TigerFISH in smaller fungal genomes:

some genome statistics:
size = 318.2 mb
scaffolds= 66
haplotypes = 2

Thanks in advance,

Sander