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Merged
grexor merged 2 commits into from
Oct 8, 2025
Merged

Dev #109

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grexor Oct 8, 2025
5742970
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grexor Oct 8, 2025
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5 changes: 5 additions & 0 deletions README.md
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Expand Up @@ -57,6 +57,11 @@ Easiest is to check [datasets](datasets) examples to see how the above files loo

## Changelog<a name="changelog"></a>

**v0.8**: released in October 2025

* removed platform config option (now snakemake submits jobs to the cluster)
* pandas and other minor improvements

**v0.7**: released in February 2025

* [Snakemake](Snakefile) version
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3 changes: 0 additions & 3 deletions datasets/GSE126543/splicekit.config
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Expand Up @@ -27,9 +27,6 @@ scanRBP = True
protein = "TARDBP.K562.00"
protein_label = "tdp43" # used in file names and titles

# platform and container
platform = "cluster" # "desktop" or "cluster" (HPC with SLURM)

# leaving the container empty will use software dependencies installed on your system
# if not, use singularity
container = ""
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3 changes: 0 additions & 3 deletions datasets/GSE182150/splicekit.config
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Expand Up @@ -25,9 +25,6 @@ scanRBP = False # run scanRBP on this dataset
protein = "TARDBP.K562.00"
protein_label = "tdp43" # used in file names and titles

# platform and container
platform = "cluster" # "desktop" or "cluster" (HPC with SLURM)

# leaving the container empty will use software dependencies installed on your system
# if not, use singularity
container = ""
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3 changes: 0 additions & 3 deletions datasets/GSE221868/splicekit.config
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Expand Up @@ -25,9 +25,6 @@ scanRBP = False # run scanRBP on this dataset
protein = "TARDBP.K562.00"
protein_label = "tdp43" # used in file names and titles

# platform and container
platform = "desktop" # "desktop" or "cluster" (HPC with SLURM)

# leaving the container empty will use software dependencies installed on your system
# if not, use singularity
container = ""
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3 changes: 0 additions & 3 deletions datasets/PRJEB42763/splicekit.config
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Expand Up @@ -25,9 +25,6 @@ scanRBP = True # run scanRBP on this dataset
protein = "TARDBP.K562.00"
protein_label = "tdp43" # used in file names and titles

# platform and container
platform = "desktop" # "desktop" or "cluster" (HPC with SLURM)

# leaving the container empty will use software dependencies installed on your system
container = ""

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2 changes: 1 addition & 1 deletion splicekit/version
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@@ -1 +1 @@
0.7.1
0.8
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