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Commented out all calls to the matlab parpool / cluster #10

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Commented out all calls to the matlab parpool / cluster #10

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43 changes: 21 additions & 22 deletions main.m
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Original file line number Diff line number Diff line change
Expand Up @@ -63,34 +63,33 @@
parc = feInflateLabels(labs, mask, infl, 'vert', './output/labels_dilated.nii.gz');

%% start parallel pool

disp(['Opening parallel pool with ', num2str(nclust), ' cores...']);

% disp(['Opening parallel pool with ', num2str(nclust), ' cores...']);
%
% create parallel cluster object
clust = parcluster;

%clust = parcluster;
%
% set number of cores from arguments
clust.NumWorkers = nclust;

%clust.NumWorkers = nclust;
%
% set temporary cache directory
tmpdir = tempname('cache');
%tmpdir = tempname('cache');

% make cache dir
OK = mkdir(tmpdir);

%OK = mkdir(tmpdir);
%
% check and set cachedir location
if OK
% set local storage for parpool
clust.JobStorageLocation = tmpdir;
disp(['Cluster Job Storage Location set to: ' clust.JobStorageLocation]);
else
warning('Cluster Job Storage Location was unset. The default may cause failuers.');
end

%if OK
% % set local storage for parpool
% clust.JobStorageLocation = tmpdir;
% disp(['Cluster Job Storage Location set to: ' clust.JobStorageLocation]);
%else
% warning('Cluster Job Storage Location was unset. The default may cause failuers.');
%end
%
% start parpool - close parpool at end of fxn
pool = parpool(clust, nclust, 'IdleTimeout', 120);

clear tmpdir OK
%pool = parpool(clust, nclust, 'IdleTimeout', 120);
%
%clear tmpdir OK

%% create the inputs

Expand Down Expand Up @@ -175,7 +174,7 @@
%% save and exit

% remove parallel pool
delete(pool);
% delete(pool);

disp('Saving outputs...');

Expand Down