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Dockerfile has been updated #23

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3a816db
Update Dockerfile
koustav-pal Jan 12, 2024
1eec4d0
Update Dockerfile
koustav-pal Jan 12, 2024
5d753fb
Update screen.py
koustav-pal Jan 12, 2024
6cee52f
Update screen.py
koustav-pal Jan 12, 2024
b764a76
Update screen.py
koustav-pal Jan 12, 2024
5228708
Update screen.py
koustav-pal Jan 12, 2024
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6 changes: 4 additions & 2 deletions Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,9 @@ RUN apt-get update && apt-get install -y \
liblzma-dev \
libncurses-dev \
zlib1g-dev \
wget
wget \
python3 \
pip && pip install numpy==1.26.3 pandas==1.5.3 mpmath==1.3.0 scipy==1.11.4 statsmodels==0.14.1 tqdm==4.66.1 arch==6.3.0

WORKDIR /tmp/htslib/
RUN git clone https://github.com/samtools/htslib
Expand All @@ -33,7 +35,7 @@ ENV HOME /home/superSTR_user/
WORKDIR /home/superSTR_user/
RUN git clone https://github.com/bahlolab/superSTR
WORKDIR /home/superSTR_user/superSTR/C/
ENV PATH="/usr/local/sratoolkit/bin:/home/superSTR_user/superSTR/C:${PATH}"
ENV PATH="/usr/local/sratoolkit/bin:/home/superSTR_user/superSTR/C:/home/superSTR_user/superSTR/Python:${PATH}"
RUN cmake .
RUN make
RUN mkdir /home/superSTR_user/.ncbi/
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