CARCADE refactor into v3#101

Draft

allison-li-1016 wants to merge 197 commits intomainfrom

allison/carcade-refactor

Commits on Oct 23, 2023

Commits on Oct 24, 2023

IN PROGRESS adding CART cell class
allison-li-1016
committed

Commits on Oct 25, 2023

making patchCARTCell an abstract class
allison-li-1016
committed

Commits on Oct 26, 2023

implementing CART class, CARTCD4 class, added antigen binding to enums and enum tests
allison-li-1016
committed

Commits on Oct 27, 2023

Commits on Oct 30, 2023

adding comments
allison-li-1016
committed

Commits on Nov 2, 2023

Commits on Nov 3, 2023

Commits on Jan 18, 2024

added kill process
allison-li-1016
committed

Commits on Apr 1, 2024

Merge remote-tracking branch 'origin/develop' into allison/carcade-refactor
EC2 Default User
committed

Commits on Jun 27, 2024

initial CART agent refactoring file push
EC2 Default User
committed
initial Inflammation module refactorization file push
EC2 Default User
committed
including CART agent tags for default CART agent and module parameter values
EC2 Default User
committed
adding IL2 layers into env
EC2 Default User
committed
adding in treat action from CARCADE helper options
EC2 Default User
committed

Commits on Oct 23, 2024

adding treat module
EC2 Default User
committed
adding CART cell killing and reseting rule edits
EC2 Default User
committed
changing kill scheduling functionality
EC2 Default User
committed
changing reset action scheduling functionalities
EC2 Default User
committed
editing CART metabolism stepping rules
EC2 Default User
committed
changing inflammation rules
EC2 Default User
committed

Commits on Oct 24, 2024

adding antigen and target parameters in patch cells
EC2 Default User
committed
adding CAR-T specific parameters to parameter file
EC2 Default User
committed

Commits on Oct 25, 2024

post merge with develop branch
EC2 Default User
committed

Commits on Nov 13, 2024

debugging CART metabolism
EC2 Default User
committed

Commits on Nov 14, 2024

adding kill action
EC2 Default User
committed

Commits on Nov 17, 2024

removing unnecessary imports
allison-li-1016
committed

Commits on Nov 19, 2024

Commits on Dec 26, 2024

Commits on Dec 27, 2024

Commits on Dec 28, 2024

Commits on Dec 31, 2024

Commits on Jan 1, 2025

Commits on Jan 8, 2025

Commits on Jan 16, 2025

Commits on Jan 17, 2025

Merge branch 'main' of https://github.com/bagherilab/ARCADE into allison/carcade-refactor
allison-li-1016
committed

Commits on Jan 21, 2025

Commits on Jan 30, 2025

updating metabolism cart tests to test obj behavior
allison-li-1016
committed

Commits on Feb 10, 2025

Commits on Feb 19, 2025

removing redundant max density parameter
allison-li-1016
committed

Commits on Feb 20, 2025

Commits on Mar 27, 2025