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axp-knickei/README.md

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  1. netpharmpy netpharmpy Public

    A Python package for network-based pharmacology and systems-level drug analysis. Integrates Reactome pathway analysis, STRING protein-protein interaction networks, and multi-omics enrichment (GO/KE…

    Python

  2. omics-volcano-plotter omics-volcano-plotter Public

    Visualize omics differential expression with Python. Generate publication-quality volcano plots featuring custom gene labeling, color-coding, and shape mapping for clear biological insights. Ideal …

    Jupyter Notebook

  3. viral-genome-cataloger viral-genome-cataloger Public

    A simple and reproducible pipeline to dereplicate viral genomes into a non-redundant catalog of viral Operational Taxonomic Units (vOTUs) using skani and greedy clustering.

    Python

  4. HaloArchaea-Metagenomics HaloArchaea-Metagenomics Public

    A specialized, high-throughput Snakemake workflow designed for the metagenomic analysis of Haloarchaea in hypersaline ecosystems.

    Python