A structured collection of Jupyter notebooks simulating biological systems using mathematical models and numerical methods.
This repository is designed for students, researchers, and educators exploring computational biology, epidemiology, ecology, and systems modeling.
The notebooks are organized into topic-based folders for better modularity and clarity:
crispr_simulation.ipynb
Simulates particle-like behavior inspired by CRISPR gene editing mechanisms using basic stochastic and physical modeling.
fitzhugh_nagumo.ipynb
Implements the FitzHugh-Nagumo diffusion-reaction model to simulate excitability in neurons and cardiac cells.
sir_model_covid19.ipynb
Simulates the spread of SARS-CoV-2 using a compartmental SIR model, solved with the 4th-order Runge-Kutta method.
lotka_volterra.ipynb
Models predator-prey population dynamics using the classical Lotka-Volterra equations.ecological_dynamics.ipynb
Explores general ecological interactions like species competition and coexistence using system dynamics.
git clone https://github.com/avroj1t/biosimulations.git
cd biosimulations