# TE database construction


# Population structure
-> prepData.R
-> PCAonData.R



# Correlation between population structure based on SNPs and on TEs 
-> correlation.Rmd


# TEs most involved in population structure
What TEs are most involved in Malus population structure? 
TE contribution to axes
-> Variable_analysis.R 
TE association with individuals
-> Variable_analysis_by_pop.Rmd

Where are they on Malus genomes?
-> TE_mapping_on_assemblies.R

Are they shared between populations ? genomes ? 
-> Variable_analysis_by_pop.Rmd
-> TE_mapping_on_assemblies.R