ci: update codecov workflow

.github/workflows/test-coverage.yaml

@@ -1,12 +1,12 @@
 # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
 # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 on:
+  # workflow_dispatch:
   push:
     branches: [main, master]
   pull_request:
-    branches: [main, master]
 
-name: test-coverage
+name: test-coverage.yaml
 
 permissions: read-all
 
@@ -15,8 +15,6 @@ jobs:
     runs-on: ubuntu-latest
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-      R_KEEP_PKG_SOURCE: yes
-      _R_CHECK_CRAN_INCOMING_: false
 
     steps:
       - uses: actions/checkout@v4
@@ -27,20 +25,31 @@ jobs:
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          pak-version: devel
-          upgrade: 'TRUE'
-          cache-version: 2
-          extra-packages: |
-            any::covr
-            local::.
+          extra-packages: any::covr, any::xml2
           needs: coverage
 
       - name: Test coverage
         run: |
-          options(crayon.enabled = TRUE)
-          covr::codecov(
+          cov <- covr::package_coverage(
             quiet = FALSE,
             clean = FALSE,
-            token = "${{secrets.CODECOV_TOKEN}}"
+            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
           )
-        shell: Rscript {0}
+          covr::to_cobertura(cov)
+        shell: Rscript {0}
+
+      - uses: codecov/codecov-action@v4
+        with:
+          # Fail if error if not on PR, or if on PR and token is given
+          fail_ci_if_error: ${{ github.event_name != 'pull_request' || secrets.CODECOV_TOKEN }}
+          file: ./cobertura.xml
+          plugin: noop
+          disable_search: true
+          token: ${{ secrets.CODECOV_TOKEN }}
+
+      - name: Upload test results
+        if: failure()
+        uses: actions/upload-artifact@v4
+        with:
+          name: coverage-test-failures
+          path: ${{ runner.temp }}/package

NAMESPACE

@@ -18,7 +18,6 @@ export(as_matrix)
 export(as_rast)
 export(as_vector)
 export(as_wbw_raster)
-export(expect_snapshot)
 export(num_cells)
 export(print_geotiff_tags)
 export(stdev)
@@ -40,19 +39,27 @@ export(wbw_install)
 export(wbw_is_float)
 export(wbw_is_int)
 export(wbw_is_rgb)
+export(wbw_majority_filter)
 export(wbw_max_procs)
+export(wbw_maximum_filter)
 export(wbw_mean_filter)
 export(wbw_median_filter)
+export(wbw_minimum_filter)
 export(wbw_multidirectional_hillshade)
+export(wbw_olympic_filter)
+export(wbw_percentile_filter)
 export(wbw_random_sample)
+export(wbw_range_filter)
 export(wbw_read_raster)
 export(wbw_read_vector)
 export(wbw_res)
 export(wbw_rows)
 export(wbw_ruggedness_index)
 export(wbw_slope)
+export(wbw_standard_deviation_filter)
 export(wbw_to_degrees)
 export(wbw_to_radians)
+export(wbw_total_filter)
 export(wbw_version)
 export(wbw_write_raster)
 export(wbw_xres)