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arunbodd/README.md

πŸ‘‹ Hi there! I'm Arun Boddapati

Portfolio Google Scholar LinkedIn Email

🧬 Data Scientist | Machine Learning Expert | Bioinformatics & Public Health

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About Me

  • Pronouns: He/Him
  • πŸŽ“ Education: Dual Master's degrees in Bioinformatics and Biomedical Sciences from Indiana University, USA and Symbiosis University, India
  • πŸ’Ό Experience: 9 years of expertise in computational biology/bioinformatics
  • Current Role: Lead Scientist developing AI-driven solutions for complex biological problems
  • 🎯 Focus Areas: Multi-Omics, Immunology, Infectious Diseases, Wastewater Surveillance, and Machine Learning applications in Biology
  • 🧠 Currently Learning: GenAI applications to Bioinformatics, LangChain tools & toolkits, and advanced ML for rare diseases
  • πŸ’» Tech Stack: Python, R, Nextflow, AWS, Docker, and exploring AI solutions in biology
  • πŸ† Recent Achievement: Top 8 ranking in WHO's global mock Mpox response (80+ teams worldwide)

Specialties

  • 🌊 Developed Aquascope Nextflow pipeline for SARS-CoV-2 wastewater reporting at CDC
  • βœ… Created an nf-core compliance checker: Rule chunking tool for nf-core pipeline compliance validation
  • βœ… Expertise in:
    • Transcriptomics: scRNA, RNA-seq, Novel transcripts, Alternate splicing, RNA Binding proteins
    • Genomics: Whole Genome/Exome sequencing, Variant analysis
    • Proteomics: Mass Spec and Targeted NULISA panel
    • Metagenomics: Variant analysis and Phylogenetics

πŸ… Career Highlights

πŸ“š 720+ Citations

Co-Authored several high impact publications showcasing my skills in Bioinformatics/Data Science

🌊 CDC Pipeline

Developed Aquascope for national wastewater surveillance

πŸ€– AI Innovation

Created nf-core compliance checker and prompt framework for Nextflow pipeline refactoring


πŸ› οΈ Tech Stack

Python R Nextflow AWS Docker Git Linux


πŸ’‘ "Transforming biological complexity into computational clarity"

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  1. CDCgov/aquascope CDCgov/aquascope Public

    Nextflow 21 16

  2. Portfolio Portfolio Public

    I am a Bioinformatics Scientist by Profession, AI enthusiast by Curiosity and a Technologist by skillset. To know more about me Click the below link

    HTML 3 1

  3. lintelligence lintelligence Public

    Lintelligence is an advanced, intelligent validation tool that combines the power of Large Language Models (LLMs) with rule-based static analysis to ensure Nextflow pipelines, including nf-core and…

    Python

  4. RM_Baricitinib_manuscript RM_Baricitinib_manuscript Public

    Forked from BosingerLab/RM_Baricitinib_manuscript

    Analysis for Barictinib treatement in COVID infected rhesus macaques

    R