annocli

A command-line tool to query and download genome annotations from the Annotrieve API.

Installation

git clone https://github.com/apollo994/annocli.git
cd annocli
pip install -e .

Usage

annocli --help

Commands

• download: Download annotations for given taxonomy IDs
• alias: Match sequence IDs between annotation and assembly files
• summary: Get information about features and biotypes available
• stats: Get summary statistics about gene and transcript features

For detailed usage examples, see USAGE.md.