intron_exon_junction_counts.txt files empty

[mmilevskiy]

Hi,

I have run through juncBASE with two different datasets so far, but on my third I can't seem to get past the 3rd step. My intron-exon junction files are all empty. Do you know if this will be a function of the mapping software used?

Thanks,

Michael

[OlgaVT]

Hi, I encountered the same issue. Do you know, what might go wrong? Thank you!

[mmilevskiy]

Hi, no sorry, didn't figure this out and had to switch to another splicing analysis software.