Problem Running preProcess_getASEventReadCounts_step3.py

[KASHISH72]

Hi,
I am running juncBASE but when I run this command on my files, I always get this error.
Please let me know what I am doing wrong
And it always stop at this point of the command

Creating tree
Processing Reads
Getting Left and Right Counts

ERROR:
Traceback (most recent call last):
File "/Users/cherr5/Downloads/juncBASE-master/intron_exon_jctn_counts.py", line 403, in
if name == "main": main()
File "/Users/cherr5/Downloads/juncBASE-master/intron_exon_jctn_counts.py", line 269, in main
region_coord = getRegionCoord(line_list[2])
File "/Users/cherr5/Downloads/juncBASE-master/intron_exon_jctn_counts.py", line 366, in getRegionCoord
region_coord = convertCoordStr(region_coord_str)
File "/Users/cherr5/Downloads/juncBASE-master/getASEventReadCounts.py", line 2644, in convertCoordStr
start_str, end_str = start_end.split("-")
ValueError: too many values to unpack

Thanks,
Kashish Chetal

[anbrooks]

If the newest 1.2-beta release doesn't work, then let me know.

[dorothyzh]

I‘ve faced with the same situation, where is the 1.2-beta? I've pull down the github version, and it still failed.......

Traceback (most recent call last):
File "/home/xialab/software/juncBASE-master/intron_exon_jctn_counts.py", line 403, in
if name == "main": main()
File "/home/xialab/software/juncBASE-master/intron_exon_jctn_counts.py", line 269, in main
region_coord = getRegionCoord(line_list[2])
File "/home/xialab/software/juncBASE-master/intron_exon_jctn_counts.py", line 366, in getRegionCoord
region_coord = convertCoordStr(region_coord_str)
File "/home/xialab/software/juncBASE-master/getASEventReadCounts.py", line 2644, in convertCoordStr
start_str, end_str = start_end.split("-")
ValueError: too many values to unpack

Thanks,

Huan ZHONG

[anbrooks]

1.2-beta can be found under the Github repo releases: https://github.com/anbrooks/juncBASE/releases/tag/v1.2-beta

Are you still receiving the error? It might be due to chromosome or scaffold names that contain certain characters. This is a bug that is still being worked on.

[dorothyzh]

Thanks, ?I've tried it again with 1.2 beta version, and the bug still existed....... Huan

…

________________________________ 发件人: anbrooks <notifications@github.com> 发送时间: 2017年1月20日 13:11 收件人: anbrooks/juncBASE 抄送: Zhong, Huan; Comment 主题: Re: [anbrooks/juncBASE] Problem Running preProcess_getASEventReadCounts_step3.py (#2) 1.2-beta can be found under the Github repo releases: https://github.com/anbrooks/juncBASE/releases/tag/v1.2-beta Are you still receiving the error? It might be due to chromosome or scaffold names that contain certain characters. This is a bug that is still being worked on. ― You are receiving this because you commented. Reply to this email directly, view it on GitHub<#2 (comment)>, or mute the thread<https://github.com/notifications/unsubscribe-auth/ANcoMWR6D_yDUWiCmdZ-zya_75HfjVjdks5rUQbOgaJpZM4JM03U>.

[sneha100895]

Hi,

I am using the 1.2-beta version and I am also getting the same error.
Did you manage to fix it?

Sneha