juncBASE compatibility with BAMs files aligned to hg38 genome? #14
Description
Hi Dr. Brooks and juncBASE users,
Is anyone working with juncBASE using BAM files aligned to hg38 genome and hg38 based GTF files for alternative splicing analysis? The juncBASE documentation only covers hg19, and to my knowledge, published literature using this tool for human genomes has also relied on hg19. I was wondering if there are known compatibility issues with hg38, or if anyone has successfully adapted the workflow for hg38.
Any guidance would be greatly appreciated!