Trying to compare different alternative splicing tools and running into some errors with juncBASE

[asb3773]

I ran the following command: python juncBASE/run_preProcess_by_chr_step1.py -i bamInput.txt -o /stor/work/FRI-BigDataBio/alternativeSplicing/PSI-Sigma/cfolder --preProcess_options "–unique -c 1" -p 2

I am running into this error:

IOError: [Errno 24] Too many open files: '/stor/work/FRI-BigDataBio/alternativeSplicing/PSI-Sigma/cfolder/sample1/sample1_chrGL000226.1/sample1_chrGL000226.1_genome_reads.txt.gz'
Traceback (most recent call last):
File "/stor/work/FRI-BigDataBio/alternativeSplicing/juncBASE/juncBASE/preProcess_getASEventReadCounts_by_chr.py", line 904, in
File "/stor/work/FRI-BigDataBio/alternativeSplicing/juncBASE/juncBASE/preProcess_getASEventReadCounts_by_chr.py", line 353, in main
File "/usr/lib/python2.7/gzip.py", line 34, in open
File "/usr/lib/python2.7/gzip.py", line 94, in init
IOError: [Errno 24] Too many open files: '/stor/work/FRI-BigDataBio/alternativeSplicing/PSI-Sigma/cfolder/sample2/sample2_chrGL000226.1/sample2_chrGL000226.1_genome_reads.txt.gz'

Am I running something wrong? Where should I go from here?