WIP: Adding the EcoSIM for ATS PK#335

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AndrewGraus wants to merge 589 commits intoamanzi:agraus/ecosim_pkfrom

AndrewGraus:master

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Commits on Jun 6, 2023

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Commits on Jun 27, 2023

Commits on Jun 28, 2023

minor fixes for the surface runs
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Commits on Jul 11, 2023

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Commits on Jul 13, 2023

Commits on Jul 14, 2023

changes to code
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adding rooting fraction and wilting point
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Commits on Jul 18, 2023

various minor fixes
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added some more tests for parallelization
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minor fixes
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more minor fixes
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cleaning up print statements
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test looping over procs
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Commits on Jul 19, 2023

minor fixes to the mpi test
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minor changes to print statements
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Commits on Jul 26, 2023

memory fixes related to the tensors
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Commits on Jul 27, 2023

Commits on Jul 29, 2023

minor fixes to make it compile
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Commits on Jul 31, 2023

changes to make the code compile
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Commits on Aug 1, 2023

reworking of the 3D array code
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testing memory for ttc
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minor fixes
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more testing
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more minor changes
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more testing
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even more testing
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fixes to tests
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Commits on Aug 2, 2023

transport tests
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Commits on Aug 15, 2023

Commits on Aug 16, 2023

pushing changes to file paths in cmake
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Commits on Aug 17, 2023

changes to cmake files to remove linking for now
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modifications to CMake (compiles again)
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testing the column varaibles, along with cleaning up var names
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Commits on Aug 18, 2023

making some modifications to tcc
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committing some minor changes
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Commits on Aug 23, 2023

Commits on Aug 24, 2023

working version of the processor refactoring
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modifying cmake files
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more variable name changes for consistency and changing directory name
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changing cmake
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Merge branch 'master' of https://github.com/AndrewGraus/ats
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adding CMake
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more CMake commits
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Commits on Aug 25, 2023

more CMake
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more cmake
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more cmake
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Commits on Aug 28, 2023

Commits on Aug 29, 2023

cmake
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trying method of linking libs
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modifying library method
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more cmake changes
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more cmake tests
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working version
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Commits on Sep 1, 2023

pushing reworked versions of the CMake files
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Commits on Sep 5, 2023

modifications to beging initalization of ecosim
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compiled code with init ecosim
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Commits on Sep 6, 2023

minor changes
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modifications to use sizes to init
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Commits on Oct 2, 2023

Initial push to test surface and subsurface sources
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Commits on Oct 3, 2023

Commits on Oct 4, 2023

minor fixes to interface
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Commits on Oct 6, 2023

Added diagnostics for testing energy source sink
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Adding the different source
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Commits on Oct 7, 2023

Working with EcoSIM source test
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Commits on Oct 11, 2023

initial commit of seb (debugging)
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Commits on Oct 23, 2023

various debugging tests for suction
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Commits on Oct 24, 2023

Commits on Nov 2, 2023

working version of surface balance
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adding some print statements to the overlandflow PK
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Commits on Nov 6, 2023

Commits on Nov 7, 2023

Commits on Nov 8, 2023

fixed version of the ecosim PK
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testing new parameters
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Commits on Nov 9, 2023

adding WP and FC params
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Commits on Nov 13, 2023

trying to add suction head
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Commits on Nov 14, 2023

attempting to add suction head more broadly to flow
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Commits on Nov 15, 2023

Commits on Nov 16, 2023

Commits on Nov 20, 2023

Commits on Nov 27, 2023

Moved matric pressure and made it work
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Commits on Nov 29, 2023

adding some prints
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Commits on Nov 30, 2023

checking depth variables
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adding cumulative depth
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fixes to make reverse cumulative
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Commits on Dec 9, 2023

minor fixes
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Commits on Dec 13, 2023

more changes
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Testing different energy methods
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Commits on Dec 14, 2023

Commits on Dec 21, 2023

deleting matric pressure eval from flow
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permafrost changes
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Commits on Jan 23, 2024

Changes to allow compilation even without EcoSIM
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Commits on Apr 17, 2024

Fixing the ATS build to remove hard links
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Commits on May 16, 2024

various build fixes
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Commits on Jul 1, 2024

added snow precipitation to the ATS side of the coupler
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Commits on Jul 3, 2024

minor bug fix
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Commits on Aug 1, 2024

Commits on Aug 6, 2024

minor bugfix
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Commits on Aug 22, 2024

removing snow precipitation
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Commits on Oct 1, 2024

minor changes to prints
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Commits on Oct 3, 2024

adding snow depth dataset
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Commits on Oct 10, 2024

added snow-depth dataset
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adding test dataset
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Commits on Oct 15, 2024

added working surface-snow_depth dataset
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Commits on Oct 22, 2024

Put in a fixed version of the snow_depth dataset
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Commits on Oct 24, 2024

Code cleanup from the snow depth test
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Commits on Nov 12, 2024

added data flattening for coupler
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Commits on Feb 4, 2025

minor changes to reflect EcoSIM changes
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Commits on Feb 17, 2025

Minor changes for snow buildup and mass balance check
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Commits on Mar 4, 2025

merge with ats main
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Commits on Mar 5, 2025

changes to function calls to make code compile after rebase
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Commits on Mar 10, 2025

minor bug fixes
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Commits on Mar 20, 2025

changing the ownership methods of the source variables, the coupler seems to be working again
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Commits on Apr 11, 2025

minor fixes to keys and shared libraries
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Commits on Apr 18, 2025

bugfixes to owned evaluators
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Commits on Apr 22, 2025

minor clean up
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Commits on May 14, 2025

adding in the phenology dataset
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Commits on Jun 20, 2025

fix for parallel issues
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Commits on Jul 25, 2025

working version of coupled phenology
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Commits on Jul 30, 2025

updated EcoSIM timers to be more stable and account for day and year
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Commits on Aug 1, 2025

adding some additonal vars
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Commits on Aug 7, 2025

minor updates to cmake files
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Commits on Aug 21, 2025

added snow albedo modifications
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Commits on Sep 9, 2025

minor Cmakelists fixes to allow the coupler access to the plant api
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Commits on Sep 13, 2025

Adding runtime options
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Commits on Sep 30, 2025

Minor fix to CMake files
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Commits on Oct 13, 2025

First large code clean up
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Commits on Oct 14, 2025

Second clean up commit
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Commits on Oct 16, 2025

Adding vars to ATS-EcoSIM
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Commits on Nov 17, 2025

Adding flux component datasets
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Commits on Nov 20, 2025

Commits on Nov 26, 2025

Working ATS-EcoSIM for ATS 1.6
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Commits on Dec 16, 2025

Inital header documentation and code cleanup
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Commits on Jan 7, 2026

Commits on Jan 9, 2026

Switching density to molar density
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Commits on Jan 13, 2026

Updates to remove transport and ATS SEB PK
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Commits on Jan 15, 2026

Commits on Jan 26, 2026

Updates to coupling data structures and custom evaluators
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Commits on Jan 27, 2026

Commits on Feb 4, 2026

Updating precipitation_rain
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