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SCRUM-4816: rename anatomicalExpression to anatomicalExpressionSlim #1541

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Merged
oblodgett merged 2 commits into from
Mar 30, 2026
Merged

SCRUM-4816: rename anatomicalExpression to anatomicalExpressionSlim #1541

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62116e3
SCRUM-4816 feat: rename anatomicalExpression to anatomicalExpressionS…
oblodgett Mar 27, 2026
a3ec0dc
SCRUM-4816 feat: bump curation dependency to v0.47.17
oblodgett Mar 30, 2026
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8 changes: 4 additions & 4 deletions agr_api/src/main/java/org/alliancegenome/api/service/helper/SearchHelper.java
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Original file line number Diff line number Diff line change
Expand Up @@ -50,7 +50,7 @@ public class SearchHelper {
add("species");
add("tags");
add("assays");
add("anatomicalExpression");
add("anatomicalExpressionSlim");
add("sex");
// add("stage"); will be implemented in the future
}
Expand Down Expand Up @@ -97,7 +97,7 @@ public class SearchHelper {

public Map<String, String> highlightCollapseMap = new HashMap<>() {
{
put("anatomicalExpression", "expression");
put("anatomicalExpressionSlim", "expression");
put("anatomicalExpressionWithParents", "expression");
put("cellularComponentExpression", "expression");
put("cellularComponentExpressionWithParents", "expression");
Expand Down Expand Up @@ -131,8 +131,8 @@ public List<String> getSearchFields() {
add("alleles");
add("alleles.text");
add("alleles.autocomplete");
add("anatomicalExpression");
add("anatomicalExpression.keyword");
add("anatomicalExpressionSlim");
add("anatomicalExpressionSlim.keyword");
add("anatomicalExpressionWithParents");
add("anatomicalExpressionWithParents.keyword");
add("associatedSpecies");
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2 changes: 1 addition & 1 deletion agr_java_core/src/main/java/org/alliancegenome/es/index/site/schema/Mapping.java
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Expand Up @@ -138,7 +138,7 @@ protected void buildSharedSearchableDocumentMappings() throws IOException {
new FieldBuilder(builder, "object.curie", "text").keyword().sort().build(); // gene_disease_annotation, allele_disease_annotation, agm_disease_annotation
new FieldBuilder(builder, "subject.primaryExternalId", "text").keyword().sort().build(); // gene_disease_annotation, allele_disease_annotation, agm_disease_annotation

new FieldBuilder(builder, "anatomicalExpression", "text").keyword().build(); // gene, dataset
new FieldBuilder(builder, "anatomicalExpressionSlim", "text").keyword().build(); // gene, dataset
new FieldBuilder(builder, "whereExpressed", "text").keyword().build(); // gene, dataset

new FieldBuilder(builder, "associatedSpecies", "text").keyword().synonym().sort().build(); // go, disease
Expand Down
2 changes: 1 addition & 1 deletion pom.xml
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Expand Up @@ -23,7 +23,7 @@
<maven-checkstyle-plugin.version>3.3.1</maven-checkstyle-plugin.version>
<checkstyle.version>10.17.0</checkstyle.version>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<curation.version>v0.47.16</curation.version>
<curation.version>v0.47.17</curation.version>
</properties>
<dependencyManagement>
<dependencies>
Expand Down
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