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SCRUM-5829 get variant type and moelcular consequence se the same jso… #1538

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Merged
cmpich merged 3 commits into from
Mar 27, 2026
Merged

SCRUM-5829 get variant type and moelcular consequence se the same jso… #1538

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d7cf55c
SCRUM-5829 get variant type and moelcular consequence se the same jso…
cmpich Mar 26, 2026
b0369a3
rename attributes
cmpich Mar 27, 2026
cf11f4b
Merge branch 'stage' into SCRUM-5829
cmpich Mar 27, 2026
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4 changes: 2 additions & 2 deletions ...src/main/java/org/alliancegenome/core/variant/converters/AlleleSearchResultConverter.java
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Original file line number Diff line number Diff line change
Expand Up @@ -104,7 +104,7 @@ public List<AlleleSearchResultDocument> convert(List<AlleleSummaryDocument> alle
.distinct()
.toList();
if (!variantTypes.isEmpty()) {
searchDoc.setVariantTypes(variantTypes);
searchDoc.setVariantType(variantTypes);
}

Set<String> consequences = new HashSet<>();
Expand All @@ -129,7 +129,7 @@ public List<AlleleSearchResultDocument> convert(List<AlleleSummaryDocument> alle
}
}
if (!consequences.isEmpty()) {
searchDoc.setMolecularConsequences(consequences);
searchDoc.setMolecularConsequence(consequences);
}
}

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1 change: 1 addition & 0 deletions agr_java_core/src/main/java/org/alliancegenome/es/index/site/dao/SearchDAO.java
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Expand Up @@ -30,6 +30,7 @@ public Long performCountQuery(QueryBuilder query) {

searchSourceBuilder.query(query);
searchSourceBuilder.size(0);
searchSourceBuilder.trackTotalHits(true);

SearchRequest searchRequest = new SearchRequest(ConfigHelper.getEsIndex());
searchRequest.source(searchSourceBuilder);
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4 changes: 2 additions & 2 deletions agr_java_core/src/main/java/org/alliancegenome/es/model/AlleleSearchResultDocument.java
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Expand Up @@ -29,8 +29,8 @@ public AlleleSearchResultDocument() {
private String species;
private Double popularity;
private String alterationType;
private List<String> variantTypes;
private Set<String> molecularConsequences;
private List<String> variantType;
private Set<String> molecularConsequence;
private Set<String> constructExpressedComponent;
private Set<String> constructRegulatoryRegion;
private Set<String> constructKnockdownComponent;
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