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SCRUM-3999 filter by source column #1254

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Merged
cmpich merged 1 commit into from
Mar 5, 2025
Merged

SCRUM-3999 filter by source column #1254

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1 change: 1 addition & 0 deletions agr_api/src/main/java/org/alliancegenome/api/controller/AlleleController.java
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Expand Up @@ -116,6 +116,7 @@ public JsonResultResponse<AllelePhenotypeAnnotationDocument> getPhenotypePerAlle
Pagination pagination = new Pagination(page, limit, sortBy, null);
pagination.addFilterOption("phenotypeStatement", phenotype);
pagination.addFilterOption("pubmedPubModIDs", reference);
pagination.addFilterOption("primaryAnnotations.dataProvider.abbreviation", source);
try {
JsonResultResponse<AllelePhenotypeAnnotationDocument> phenotypes = phenotypeESService.getAllelePhenotypeAnnotations(id, pagination, false);
phenotypes.setHttpServletRequest(null);
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4 changes: 2 additions & 2 deletions agr_api/src/main/java/org/alliancegenome/api/rest/interfaces/AlleleRESTInterface.java
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Expand Up @@ -88,8 +88,8 @@ JsonResultResponse<Allele> getAllelesPerSpecies(
JsonResultResponse<AllelePhenotypeAnnotationDocument> getPhenotypePerAllele(@Parameter(in = ParameterIn.PATH, name = "id", description = "Search for Phenotypes for a given Allele by ID", required = true, schema = @Schema(type = SchemaType.STRING)) @PathParam("id") String id,
@Parameter(in = ParameterIn.QUERY, name = "limit", description = "Number of rows returned", schema = @Schema(type = SchemaType.INTEGER)) @DefaultValue("20") @QueryParam("limit") Integer limit,
@Parameter(in = ParameterIn.QUERY, name = "page", description = "Page number", schema = @Schema(type = SchemaType.INTEGER)) @DefaultValue("1") @QueryParam("page") Integer page,
@Parameter(in = ParameterIn.QUERY, name = "filter.termName", description = "termName annotation") @QueryParam("filter.termName") String phenotype, @Parameter(in = ParameterIn.QUERY, name = "filter.source", description = "Source")
@QueryParam("filter.source") String source,
@Parameter(in = ParameterIn.QUERY, name = "filter.termName", description = "termName annotation") @QueryParam("filter.termName") String phenotype,
@Parameter(in = ParameterIn.QUERY, name = "filter.dataProvider", description = "Source", schema = @Schema(type = SchemaType.STRING)) @QueryParam("filter.dataProvider") String source,
@Parameter(in = ParameterIn.QUERY, name = "filter.reference", description = "Reference number: PUBMED or a Pub ID from the MOD") @QueryParam("filter.reference") String reference,
@Parameter(in = ParameterIn.QUERY, name = "sortBy", description = "Field name by which to sort", schema = @Schema(type = SchemaType.STRING)) @DefaultValue("symbol") @QueryParam("sortBy") String sortBy

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