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4 followers · 12 following

Achievements

Achievement: Pair ExtraordinaireAchievement: Pull Shark

Achievements

Achievement: Pair ExtraordinaireAchievement: Pull Shark

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@pipecraft2

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alihkz94/README.md
  • 👋 Hi, I’m Ali Hakimzadeh
  • 👀 I’m interested in bioinformatics analysis and developing pipelines.
  • 🌱 I’m currently learning and developing my scripts in several programming languages(Python, R, SnakeMake, Nextflow).
  • 💞️ I’m looking to collaborate on metagenomics and transcriptomics (single-cell and bulk) data analysis.
  • 📫 How to reach me ali.hakimzadeh@ut.ee; Hakimzadeh.ali993@gmail.com

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  1. long-chimeric-reads-project long-chimeric-reads-project Public

    Scripts related to chimeric sequences filtering and evaluating them

    Python 1 1

  2. metagenomics_metabarcoding metagenomics_metabarcoding Public

    scripts for different steps of metabarcoding analysis on HPC

    Python

  3. Oncology-data-analysis Oncology-data-analysis Public

    ScRNAseq and WES analysis

    Python

  4. pipecraft2/pipecraft pipecraft2/pipecraft Public

    PipeCraft2 is a Graphical User Interface (GUI) for various metabarcoding pipelines

    JavaScript 3 1

  5. Mycology-Microbiology-Center/EUKARYOME Mycology-Microbiology-Center/EUKARYOME Public

    The rRNA gene reference database for identification of eukaryotes

    Python 1

  6. SnakeEUK SnakeEUK Public

    Pipeline for processing taxonomic FASTA files and converting them into formats suitable for multiple downstream tools

    Python