This repository conatains papers from my time at the Infectious Diseases Modelling team of the UK Health Security Agency (UKHSA), formerly Public Health England (PHE), during the COVID-19 pandemic.
Some of these papers I was involved with, and others were linked due to talks given at:
- PyData London meetup, 7th March 2023
- LondonR meetup, 25th April 2024
- EARL conference 5th September 2024
- AIcamp 9th October 2024.
The following are available online:
The real-time infection hospitalisation and fatality risk across the COVID-19 pandemic in England (referred to ax IXR-rates above)
The rapid replacement of the SARS-CoV-2 Delta variant by Omicron (B.1.1.529) in England (Growth rate plots)
Transmission dynamics of monkeypox in the United Kingdom: contact tracing study
Though the last paper is about mpox it, along with the prior paper, deal with time delay distribution modelling and how to deal with coarsely collected data.