oncogenomics-tools-docker

1. clone docker repo

   git clone https://github.com/CCRGeneticsBranch/oncogenomics-tools-docker
   cd oncogenomics-tools-docker
   

2. clone oncogenomics tools

   git clone https://github.com/CCRGeneticsBranch/oncogenomics-tools app
   

3. create .env file

    FLASK_SECRET_KEY=
    TIER="dev"
    HOME_URI=oncogenomics-tools.cancer.gov
    MOUNT=/mnt/otl
    
    #mysql
    DATABASE_URL=
    
    #iTrust
    OAUTH_ISSUER=https://stsstg.nih.gov
    OAUTH_CLIENT=
    OAUTH_SECRET=
    
    AUTH_ENDPOINT=/auth/oauth/v2/authorize
    TOKEN_ENDPOINT=/auth/oauth/v2/token
    USERINFO_ENDPOINT=/openid/connect/v1.1/userinfo
   

4. build image

   ./build.sh
   

5. startup/shutdown server

   ./up.sh or ./down.sh