acflewis/23andme_to_VCF
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Conversion script from 23andme file format to VCF format ________________ 23andme gives you your genotype information in a nonstandard file format. Variant Call Format, or VCF, is used by more applications. Information on the VCF is found here: http://www.1000genomes.org/node/101 TO USE -- Make sure you have conversion_script.py and the reference file, 23andme_reference_genome.txt.gz, in a directory -- From that directory, run 'python conversion_script.py path/to/23andme_input_file.txt path/to/vcf_output_file.vcf' NOTES -- Check the reference build your 23andme file used. Currently, these use reference build 37. A new 23andme_reference_genome.txt will be needed if this changes, in which case please contact me. -- This conversion supports both v3 and v4 of 23andme's chip