The source code for the Simulation and application in the "Integration of Proxy Intermediate Omics traits into a Nonlinear Two-Step model for accurate phenotypic prediction" was uploaded here.
doi: https://doi.org/10.1101/2025.03.14.643213
| File | Model / Purpose |
|---|---|
MyFunctions.R |
Custom helper functions |
| File | Model / Purpose |
|---|---|
1_bb.Rmd |
BLUP–BLUP |
2_rr.Rmd |
RF–RF |
3_rb.Rmd |
RF–BLUP |
4_br.Rmd |
BLUP–RF |
5_compare.Rmd |
Model comparison |
| File | Description |
|---|---|
1_metpred.Rmd |
Metabolome prediction |
2_phenopred_GMet.Rmd |
Phenotype prediction using genomic + metabolomic data |
3_phenopred_GMicroMet.Rmd |
Phenotype prediction using genomic + micro + metabolomic data |