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Any suggestion about hotspot analysis on scATAC data

Status: Open.

#55 In YosefLab/Hotspot;

· LongpanICR opened on Jan 2, 2026

hs.compute_autocorrelations() error: AttributeError: 'csc_matrix' object has no attribute 'A'

Status: Open.

#54 In YosefLab/Hotspot;

· muxuzheng6-cmd opened on Dec 5, 2025

R

Status: Open.

#53 In YosefLab/Hotspot;

· JWJ13164328557 opened on Nov 11, 2025

plot like spottedpy

Status: Open.

#51 In YosefLab/Hotspot;

· worker000000 opened on Jun 25, 2025

hs.create_modules is a random number seed set in this function, why do I run the same code every time the number of modules is not consistent

Status: Open.

#46 In YosefLab/Hotspot;

· ZhangZao-HB opened on Feb 24, 2025

compute_local_correlations not stop

Status: Open.

#44 In YosefLab/Hotspot;

· solivehong opened on Dec 25, 2024

Supporting the analysis of multi-sample SRT data

Status: Open.

#43 In YosefLab/Hotspot;

· Antidington opened on Dec 5, 2024

hs.module_scores return nothing

Status: Open.

#42 In YosefLab/Hotspot;

· lvmt opened on Nov 28, 2024

Autocorrelations of subset of genes against all genes

Status: Open.

#38 In YosefLab/Hotspot;

· jnmark opened on May 24, 2024

10x visium data

Status: Open.

#37 In YosefLab/Hotspot;

· wangjiawen2013 opened on Mar 15, 2024

Getting 5 times more gene in a module than <code>min_gene_threshold</code>

Status: Open.

#36 In YosefLab/Hotspot;

· amissarova opened on Feb 14, 2024

Image parameter description

Status: Open.

#35 In YosefLab/Hotspot;

· Zhenbin24 opened on Feb 4, 2024