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Achievement: Pair ExtraordinaireAchievement: Pull Shark

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WeihaoGe1009/README.md

👋 Hi, I'm Weihao Ge

🎯 Currently building a portfolio focused on:

  • Interface to generate Clinical documents with LLMs
  • scRNA-seq dashboards
  • Reproducible genomics pipelines
  • ML models for clinical and bio data
  • Microbiome pangenomics
  • DL-powered cell segmentation

🛠️ Tools I'm Actively Working With

These tools reflect the stack used across my current and upcoming projects (2025–2026). All projects are scoped for reproducibility, automation, and visual delivery.

🧬 Genomics & Bioinformatics

Nextflow · GATK · PacBio/Flye · Samtools · AlphaFold3 · Cloud deployment

🧠 LLMs & Clinical NLP

HuggingFace Transformers · LLaMA 3 · Prompt Engineering · Streamlit · Gradio

📊 ML for Clinical & Phenotypic Data

scikit-learn · statistical modeling · Pandas · Seaborn

🧫 Single-Cell Analysis & Visualization

Seurat · Scanpy · R · ggplot2 · R Shiny · QuPath · DeepCell

🧪 Microbiome & Pangenomics

PanPhlAn · Roary · Kraken2 · Plotly Dash · Metagenome Profiling

💡 My immigration-friendly portfolio is under construction.
Each project is designed to be small, reproducible, and applicable to real-world bio/clinical workflows. Seeking Canada immigration and employment

📌 First projects launching June 2025 — check back soon!

📫 Contact me on LinkedIn or via Email

I use ChatGPT to assist with drafting plans and README structures — everything here reflects my actual project roadmap and skills in progress.

Popular repositories Loading

  1. Cyber-Law-and-Empirical-Hub Cyber-Law-and-Empirical-Hub Public template

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    The hub is for cyber law and empirical scholars to share useful resources

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  2. WeihaoGe1009 WeihaoGe1009 Public

  3. llm-clinical-writer llm-clinical-writer Public

    LLM-powered assistant for generating clinical documents like protocols, CSRs, and SAPs

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  4. ml-demos-temp-inputs ml-demos-temp-inputs Public

    Temporary testing repo for Google Colab access. Not maintained.

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  5. ebbinghaus-reminder ebbinghaus-reminder Public

    a small code to help memorize small stuff and practice using sqlite3.

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  6. learn-my-molecules learn-my-molecules Public

    A guided toolkit for building chemical intuition in organic and biochemistry. Focused on functional groups, biologically relevant molecules, enzymes, ligands, and key metabolic pathways. Designed f…

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