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Error Encountered: src/bam_access.c: bam_access_get_multi_position_base_counts:379 errno: No such file or directory

Status: Open.

#167 In Wedge-lab/battenberg;

· HeadingSouth opened on Jan 19, 2026

Potential Issues in Current Development Version

Status: Open.

#163 In Wedge-lab/battenberg;

· HMU-WH opened on Oct 27, 2025

Setting non-default parameters

Status: Open.

#162 In Wedge-lab/battenberg;

· davidwedge opened on Oct 22, 2025

chrX non-PAR only ?

Status: Open.

#161 In Wedge-lab/battenberg;

· panyuwen opened on Sep 5, 2025

'chr' removing added back and java version

Status: Open.

#160 In Wedge-lab/battenberg;

· Tim-Yu opened on Sep 1, 2025

Using Battenberg outputs for GISTIC

Status: Open.

#159 In Wedge-lab/battenberg;

· ses101-24 opened on Jul 16, 2025

Why Are BAFs Recalculated in Battenberg Instead of Using _Tumour_mutantBAF.tab

Status: Open.

#158 In Wedge-lab/battenberg;

· Mousiekin opened on Jun 12, 2025

Suggestion: Add Support for Per-Chromosome Arm Imputation to Reduce Memory Usage

Status: Open.

#157 In Wedge-lab/battenberg;

· Mousiekin opened on Jun 12, 2025

Does Battenberg support T2T-CHM13 genome?

Status: Open.

#156 In Wedge-lab/battenberg;

· DayTimeMouse opened on Jun 12, 2025

Incorrect plotting of ChrX

Status: Open.

#153 In Wedge-lab/battenberg;

· jcesar101 opened on May 21, 2025

odd conditional branch in filtcopynumber.R in pre_3.0

Status: Open.

#146 In Wedge-lab/battenberg;

· hidehitofukushima opened on Mar 1, 2025

Problematic loci

Status: Open.

#142 In Wedge-lab/battenberg;

· Mousiekin opened on Jan 10, 2025