Extensions to Tyssue: solver updates, topology transitions, and cell behaviour functions#3
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PinkGenji wants to merge 38 commits intoVirtualPregnancy:abi-pmgfrom
Open
Extensions to Tyssue: solver updates, topology transitions, and cell behaviour functions#3PinkGenji wants to merge 38 commits intoVirtualPregnancy:abi-pmgfrom
PinkGenji wants to merge 38 commits intoVirtualPregnancy:abi-pmgfrom
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not so sure about cell data frame, leave it in the "else" case, which is logically the same as unchanged.
need to double check the logic with the use of stable_id
used t1_threshold consistently for T1Swap function; improved the printout message in T2Swap
…ationships after manager executes a deque
now the function takes advantage of both the unique ID and dataframe index
still needs to check how cell class is controlled in proliferation related actions
to avoid using the same name from exisiting drop_face function in sheet_topology
PinkGenji
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This PR contains a series of updates developed over time, including a single-time-step solver for better debugging use, dynamic topology transitions (T1/T2), stable ID handling, and multi-class cell behaviour extensions (proliferation, fusion, extrusion), along with associated bug fixes and documentation updates.