[pre-commit.ci] pre-commit autoupdate

.github/workflows/static_code_checks.yaml

@@ -47,10 +47,12 @@ jobs:
           # GHSA-3749-ghw9-m3mg and GHSA-887c-mr87-cxwp are pytorch vulnerabilities that require 2.7 and 2.8 but we're
           # pinning to 2.6.0 for now.
           # GHSA-wf7f-8fxf-xfxc ML Flow vulnerability in deserialization that hasn't been patched yet.
+          # CVE-2025-53000 NBConvert issue, no fix yet.
           ignore-vulns: |
             GHSA-3749-ghw9-m3mg
             GHSA-887c-mr87-cxwp
             GHSA-wf7f-8fxf-xfxc
+            CVE-2025-53000
 
       # Deleting some temporary files and useless folders to free up space in order to have space for
       # the cache file, and printing the disk space info at the beggining and end.

.pre-commit-config.yaml

@@ -21,7 +21,7 @@ repos:
       - id: check-toml
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: 'v0.14.9'
+    rev: 'v0.14.10'
     hooks:
     - id: ruff-check
       args: [--fix, --exit-non-zero-on-fix]

fl4health/datasets/rxrx1/preprocess.py

@@ -1,6 +1,7 @@
 import argparse
 import os
 import pickle
+from collections.abc import Hashable
 from pathlib import Path
 from typing import Any
 
@@ -24,7 +25,7 @@ def filter_and_save_data(metadata: pd.DataFrame, top_sirna_ids: list[int], cell_
     filtered_metadata.to_csv(output_path, index=False)
 
 
-def load_image(row: dict[str, Any], root: Path) -> torch.Tensor:
+def load_image(row: dict[Hashable, Any], root: Path) -> torch.Tensor:
     """
     Load an image tensor for a given row of metadata.