Create GUI for configuring a Dataset and DAQ Systems for a Dataset

+ndi/+daq/+system/mfdaq.m

@@ -312,7 +312,6 @@
                     channeltype, channel, ndi_daqsystem_mfdaq_obj.session());
             end;
         end;
-
     end; % methods
 
     methods (Static), % functions that don't need the object

+ndi/+daq/templates/daq_reader.mtemplate

@@ -0,0 +1,5 @@
+classdef {{ReaderClassName}} < {{ReaderSuperClass}}
+
+
+
+end

+ndi/+daq/templates/daq_reader_variables.json

@@ -0,0 +1,4 @@
+{
+    "ReaderClassName": "",
+    "ReaderSuperClass": ""
+}

+ndi/+database/+metadata_ds_core/+conversion/+internal/createInstance.m

@@ -0,0 +1,49 @@
+function openMindsInstance = createInstance(dataStruct, openMindsType)
+
+    arguments
+        dataStruct (1,1) struct
+        openMindsType (1,1) string
+    end
+
+    try
+        conversionFunctionMap = getConcreteConversionMap(openMindsType);
+    catch
+        conversionFunctionMap = struct;
+    end
+
+    openMindsInstance = feval( openMindsType );
+    dataFields = fieldnames(dataStruct);
+
+    for i = 1:numel(dataFields)
+        [fieldName, propName] = deal( dataFields{i} );
+        propName(1) = lower(propName(1));
+
+        value = dataStruct.(fieldName);
+        if isempty(value); continue; end % Skip conversion for empty values
+
+        if isa(value, 'char'); value = string(value); end
+
+        if isfield( conversionFunctionMap, propName )
+
+            conversionFcn = conversionFunctionMap.(propName);
+
+            if iscell(value)
+                value = cellfun(@(s) conversionFcn(s), value);
+
+            elseif numel(value) > 1 % array conversion
+                value = arrayfun(@(s) conversionFcn(s), value);
+
+            else
+                value = conversionFcn(value);
+            end
+        else
+            % Insert value directly
+        end
+
+        try
+            openMindsInstance.(propName) = value;
+        catch ME
+            % warning(ME.message)
+        end
+    end
+end

+ndi/+database/+metadata_ds_core/+conversion/convertStrains.m

@@ -0,0 +1,28 @@
+function [strainInstanceMap] = convertStrains(items)
+
+    import ndi.database.metadata_ds_core.conversion.internal.createInstance
+
+    strainInstanceMap = containers.Map();
+
+    % Convert items without background strains
+    for i = 1:numel(items)
+        thisItem = items(i);
+        thisItem = rmfield(thisItem, 'backgroundStrain');
+
+        thisInstance = createInstance(thisItem, 'openminds.core.Strain');
+
+        strainInstanceMap(thisItem.name) = thisInstance;
+    end
+
+    % "Recursively" link together background strains
+    for i = 1:numel(items)
+        thisItem = items(i);
+        thisInstance = strainInstanceMap(thisItem.name);
+
+        for j = 1:numel(thisItem.backgroundStrain)
+            bgStrainName = thisItem.backgroundStrain(j);
+            bgInstance = strainInstanceMap(bgStrainName);
+            thisInstance.backgroundStrain(j) = bgInstance;
+        end
+    end
+end

+ndi/+database/+metadata_ds_core/+conversion/getAllStrains.m

@@ -0,0 +1,10 @@
+function strainInstanceMap = getAllStrains()
+
+    import ndi.database.metadata_app.fun.loadUserInstanceCatalog
+    import ndi.database.metadata_ds_core.conversion.convertStrains
+
+    strainCatalog = loadUserInstanceCatalog('Strain');
+
+    % Todo: Adapt conversion to also convert custom species.
+    strainInstanceMap = convertStrains(strainCatalog.getAll() );
+end

+ndi/+dataset/+gui/+enum/FolderLevelType.m

@@ -0,0 +1,28 @@
+classdef FolderLevelType
+
+    enumeration
+        Undefined('Undefined')
+        Subject('Subject')
+        Session('Session')
+        Trial('Trial')
+        Date('Date')
+        Epoch('Epoch')
+    end
+
+    properties
+        Name
+        DefaultFolderPrefix
+    end
+
+    methods
+        function obj = FolderLevelType(name)
+            obj.Name = name;
+            switch obj.Name
+                case 'Subject'
+                    obj.DefaultFolderPrefix = 'subject';
+                case 'Session'
+                    obj.DefaultFolderPrefix = 'session';
+            end
+        end
+    end
+end

+ndi/+dataset/+gui/+event/UserActionEventData.m

@@ -0,0 +1,11 @@
+classdef UserActionEventData < event.EventData
+    properties
+        UserAction
+    end
+
+    methods
+        function obj = UserActionEventData(userAction)
+            obj.UserAction = userAction;
+        end
+    end
+end