added pydoit example stuff #5
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Basically, this PR includes:
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pydoit/doit_ex.py
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| def task_index_ref(): | ||
| return { 'file_dep' : [opts.ref], | ||
| 'actions' : ['bwa index %(dependencies)'], | ||
| 'targets' : [opts.ref.fai] } |
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This seems like it should be opts.ref + '.fai' ? Or is pydoit super smart?
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F is a class that I made which extends str and uses that syntax for adding extensions. It's not pydoit's thing.
F("foo").red == F("foo.red") == "foo.red"
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ahh, ok I missed that. For some reason was thinking opts.ref was just a string
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I am not sure how to do "dependency which might not exist" yet, (i.e. |
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| def gen_cutdapt(fqs): | ||
| func = cutadapt_paired if len(fqs) > 1 else cutadapt_up | ||
| return { 'targets' : map(_.cutadapt, fqs), |
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What does the _ stand for in _.cutadapt
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