fixed invert bug in calculateR.py where kdes computed twice. #401
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Previously, the invert_to_* functions called generate_output_kdes and then invert. But invert also called generate_output_kdes, effectively doing this same computation twice.
Removed generate_output_kdes from the invert_to_* functions and made minor adjustments so that these functions have access to the other info they need (i.e., number of clusters and the appropriate sample_set_base objects).