Upgrade dependencies with major impact

[simonoakesepimorphics]

Development Version 3.0.0

• Java version -> 21

Dependencies:

• Jersey -> 3.1.11
• Jena -> 5.5.0
• Tomcat -> 11.0.10
• Shiro -> 2.0.5
• Derby -> 10.17.1.0
• lib -> 4.0.0-SNAPSHOT
• appbase -> 4.0.0-SNAPSHOT
• Junit 4 -> Jupiter

Code changes:

• Changed servlet infrastructure from Javax to Jakarta.
  • Retained Javax dependencies for compatibility with OAuth library and STOMP messaging library.
• Updated deprecated and removed code references.
• Updated old Java syntax and API usage with modern equivalents.

[der]

All looks good, thanks!

Though in a 90 file PR can't guarantee not to have missed something.