GitHub - TsangLab/Tuque: Tools for mapping RNA-Seq reads to eukaryotic genomes

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Tools for mapping RNA-Seq reads to eukaryotic genomes

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#Tuque

Tuque includes 4 programs:

tuqueIndex to prepare Bowtie indexes that include spliced sequences
tuqueMap to map reads using the prepared indices
tuqueSplice to find splice junctions from the reads
tuqueCount to count the reads mapping within annotated sequence intervals

Tuque is available here

Intended Audience: Advanced End Users, Science/Research

Programming Language: Python

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Tools for mapping RNA-Seq reads to eukaryotic genomes

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