#Annotators

Some text annotators supporting fungal enzyme discovery.

##mycoMINE

A NLP pipeline that supports the extraction of relevant mentions from literature related to fungal enzymes.

• requires GATE 7.2 and Java 1.7 or higher

• the application has been exported with its resources, but mycoMINE/application-resources/proteins/ac2sq.zip must be unzipped before running the pipeline.

• usage:

  -- in GATE GUI: Applications > Restore Application from File... > application.xgapp

  -- in java projects: do not forget to set System property gate.home to your gate installation directory, and to make gate.jar and all libraries under gate/lib directory available on your classpath environment variable. (integration examples to be found here)

Please consult the lib .jar files for their respective licenses.

##substrateMINE

A GATE-based pipeline for substrate name tagging.

• requires GATE 7.2 and Java 1.7

• the application has been exported with its resources

• usage:

  -- in GATE GUI: Applications > Restore Application from File... > application.xgapp

  -- in java projects: do not forget to set System property gate.home to your gate installation directory, and to make gate.jar and all libraries under gate/lib directory available on your classpath environment variable. (integration examples to be found here)

Please consult the lib .jar files for their respective licenses.