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@Townsend-Lab-Yale

Townsend Lab, Yale School of Public Health

Academic Research Lab

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  1. cancereffectsizeR cancereffectsizeR Public

    cancereffectsizeR: An R package for calculation of somatic mutation rates and quantification of selection in cancer

    R 19 11

  2. KRAS_G12C_analysis KRAS_G12C_analysis Public

    Analysis within The likelihood of heterogeneity or additional mutation in KRAS or associated oncogenes to compromise targeting of oncogenic KRAS G12C

    R 2 1

  3. SNV_selection_intensity SNV_selection_intensity Public

    Analyses associated with manuscript https://www.biorxiv.org/content/early/2018/02/27/229724 ... updated pipeline with R package here: https://github.com/Townsend-Lab-Yale/cancereffectsizeR

    HTML 2 1

  4. LUAD-PhyLCT LUAD-PhyLCT Public

    Code and data for local consolidative treatement with Mahal and Yu.

    R 2

  5. pALL-mutation-effects pALL-mutation-effects Public

    Analysis of cancer effect in pediatric B-ALL and T-ALL, based on data from Brady 2022 (Nature Genetics)

    R 2

  6. CSIMAC-1 CSIMAC-1 Public

    Forked from otaken120/CSIMAC

    C++ 1 4

Repositories

Showing 10 of 37 repositories
  • Townsend-Lab-Yale/Prostate_Stages’s past year of commit activity
    R 0 0 0 0 Updated Jan 14, 2026
  • cca_mutations_and_effects Public

    Analysis of mutational signatures and somatic selection from sequencing of cholangiocarcinomas

    Townsend-Lab-Yale/cca_mutations_and_effects’s past year of commit activity
    R 0 0 0 0 Updated Jan 13, 2026
  • dbs-effects Public

    Validation of DBS effect inference in TCGA-SKCM (skin cutaneous melanoma)

    Townsend-Lab-Yale/dbs-effects’s past year of commit activity
    R 0 0 0 0 Updated Jan 6, 2026
  • ces.refset.hg38 Public

    Data package for use with cancereffectsizeR

    Townsend-Lab-Yale/ces.refset.hg38’s past year of commit activity
    R 0 GPL-3.0 1 0 0 Updated Jan 6, 2026
  • cancereffectsizeR Public

    cancereffectsizeR: An R package for calculation of somatic mutation rates and quantification of selection in cancer

    Townsend-Lab-Yale/cancereffectsizeR’s past year of commit activity
    R 19 11 1 0 Updated Jan 6, 2026
  • UCSC_GenomeBrowser_Hub Public

    BED files containing cancer effect size (CES) values mapped to genomic coordinates, formatted for visualization on the UCSC Genome Browser.

    Townsend-Lab-Yale/UCSC_GenomeBrowser_Hub’s past year of commit activity
    HTML 0 0 0 0 Updated Dec 16, 2025
  • MASSPRF Public Forked from zimingz/MASSPRF
    Townsend-Lab-Yale/MASSPRF’s past year of commit activity
    C++ 1 5 0 0 Updated Dec 9, 2025
  • lung-smoking Public

    To study the mutational and adaptive landscape of LUAD and how it is altered by tobacco smoke using an aggregated LUAD dataset

    Townsend-Lab-Yale/lung-smoking’s past year of commit activity
    Python 0 0 0 0 Updated Nov 16, 2025
  • Townsend-Lab-Yale/primary_metastatic_tc_effect_size_analysis’s past year of commit activity
    R 0 0 0 0 Updated Sep 25, 2025
  • lungcancer_SBS4_TMB_ICI Public

    All the data and code for the lungcancer_SBS4_TMB_IO projects

    Townsend-Lab-Yale/lungcancer_SBS4_TMB_ICI’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Jun 30, 2025

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