A Guide to Nextflow & nf-core

This beginner's guide introduces you to the fundamentals of Nextflow and the nf-core ecosystem, giving you the tools to build, run, and contribute to reproducible bioinformatics pipelines. By the end of the session, you will have run your first Nextflow workflow, explored a real nf-core pipeline, and taken your first steps toward contributing to a global open-source community. Happy Nextflow-ing! 🚀🎉

Table of Contents

• A Guide to Nextflow & nf-core
  • Table of Contents
  • Prerequisites
  • Viewing the Presentation

Prerequisites

• Basic UNIX command line skills
• A GitHub account (for GitHub Codespaces)
• A modern web browser (Chrome, Firefox, Safari)

Viewing the Presentation

1. Clone the repository:

   git clone https://github.com/TNS-Schrauwen/nf-core_nextflow_training.git

2. Open the training.html file in your browser by double-clicking it.