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36 changes: 36 additions & 0 deletions ardac1prd/portal.ardac.org/values.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -36,6 +36,9 @@

arborist:
enabled: true
image:
repository: quay.io/cdis/arborist
tag: "2026.03"
externalSecrets:
dbcreds: "ardac1prd-default-arborist-creds"

Expand All @@ -44,6 +47,9 @@

audit:
enabled: true
image:
repository: quay.io/cdis/audit-service
tag: "2026.03"
serviceAccount:
annotations:
eks.amazonaws.com/role-arn: "arn:aws:iam::742378880825:role/gen3_service/ardac1prd-default-audit-sa"
Expand All @@ -53,6 +59,9 @@

aws-es-proxy:
enabled: true
image:
repository: quay.io/cdis/aws-es-proxy
tag: "2026.03"
esEndpoint: "vpc-ardac1prd-gen3-metadata-34ztrt3iey3wvgd36nrpf5gk5m.us-east-1.es.amazonaws.com"
externalSecrets:
awsCreds: "ardac1prd-default-aws-es-proxy-creds"
Expand All @@ -69,6 +78,9 @@

fence:
enabled: true
image:
repository: quay.io/cdis/fence
tag: "2026.03"
serviceAccount:
annotations:
eks.amazonaws.com/role-arn: "arn:aws:iam::742378880825:role/gen3_service/ardac1prd-default-fence-sa"
Expand Down Expand Up @@ -100,6 +112,9 @@

guppy:
enabled: true
image:
repository: quay.io/cdis/guppy
tag: "2026.03"
indices:
- index: ardac_case
type: case
Expand All @@ -120,6 +135,9 @@

hatchery:
enabled: true
image:
repository: quay.io/cdis/hatchery
tag: "2026.03"

hatchery:
sidecarContainer:
Expand Down Expand Up @@ -176,13 +194,19 @@

indexd:
enabled: true
image:
repository: quay.io/cdis/indexd
tag: "2026.03"
defaultPrefix: "dg.XXXX/"
externalSecrets:
dbcreds: "ardac1prd-default-indexd-creds"
createK8sServiceCredsSecret: true

manifestservice:
enabled: true
image:
repository: quay.io/cdis/manifestservice
tag: "2026.03"
serviceAccount:
annotations:
eks.amazonaws.com/role-arn: "arn:aws:iam::742378880825:role/gen3_service/ardac1prd-default-manifestservice-sa"
Expand All @@ -197,6 +221,9 @@

peregrine:
enabled: true
image:
repository: quay.io/cdis/peregrine
tag: "2026.03"
externalSecrets:
dbcreds: "ardac1prd-default-peregrine-creds"

Expand Down Expand Up @@ -246,21 +273,21 @@
"index": {
"introduction": {
"heading": "AlcHepNet Research Data Commons",
"text": "The AlcHepNet Research Data Commons, or <a href='https://ardac.org/'>ARDaC</a>, is an integrative environment for exploring the clinical and omics data generated by AlcHepNet and related translational studies, and for investigators within the network to access data. ARDaC is sponsored by National Institute on Alcohol Abuse and Alcoholism.",

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"link": "/submission"
},
"buttons": [
{
"name": "Define Data Field",
"icon": "data-field-define",
"body": "The ARDaC Data Commons defines the data in a general way and follows the convention of Genomic Data Commons (GDC). Please study the ARDaC Data Dictionary before you start browsing.",

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"link": "/DD",
"label": "Learn more"
},
{
"name": "Explore Data",
"icon": "data-explore",
"body": "The Exploration Page allows filtering data for targeted visualization, which gives you insights and a clear overview under selected factors.",

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"link": "/explorer",
"label": "Explore data"
},
Expand All @@ -274,7 +301,7 @@
{
"name": "Submit Data",
"icon": "data-submit",
"body": "Submit Data based on the ARDaC Data Dictionary. Currently, only the AlcHepNet DCC is authorized to submit data.",

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"link": "/submission",
"label": "Submit data"
}
Expand Down Expand Up @@ -354,7 +381,7 @@
"login": {
"title": "ARDaC: Alcoholic Hepatitis Network Research Data Commons",
"subTitle": "Indiana University Data Coordinating Center",
"text": "The AlcHepNet Research Data Commons, or ARDaC, is an integrative environment for exploring the clinical and omics data generated by AlcHepNet and related translational studies, and for investigators within the network to access data. ARDaC is sponsored by National Institute on Alcohol Abuse and Alcoholism. ",

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"contact": "If you have any question please contact the ARDaC Development Team at ",
"email": "ardac@iu.edu",
"image": "/../../../../custom/sponsors/gitops-sponsors/ardac_gene"
Expand Down Expand Up @@ -1482,9 +1509,15 @@

revproxy:
enabled: true
image:
repository: quay.io/cdis/nginx
tag: "2026.03"

sheepdog:
enabled: true
image:
repository: quay.io/cdis/sheepdog
tag: "2026.03"
replicaCount: 5
externalSecrets:
dbcreds: "ardac1prd-default-sheepdog-creds"
Expand All @@ -1497,6 +1530,9 @@

wts:
enabled: true
image:
repository: quay.io/cdis/workspace-token-service
tag: "2026.03"
externalSecrets:
dbcreds: "ardac1prd-default-wts-creds"
createWtsOidcClientSecret: false
Expand Down Expand Up @@ -1640,7 +1676,7 @@
- name: ardac_follow_up
parent_props:
- path: cases.studies[study_name,study_id:submitter_id]
- path: cases[pat_id:submitter_id, case_arm:actarm,case_group:cohort,study_site,aki_status,days_180_aki,days_180_survival,days_90_aki,days_90_survival,days_to_aki]

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props:
- name: cohort
value_mappings:
Expand Down Expand Up @@ -1706,8 +1742,8 @@
src: submitter_id
- name: specimen_type
parent_props:
- path: follow_ups[follow_up_id:submitter_id, visit_day].cases[pat_id:submitter_id, case_arm:actarm].studies[study_name, study_id:submitter_id]

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- path: follow_ups.cases[pat_id:submitter_id, case_arm:actarm, case_group:cohort, study_site, aki_status, days_180_aki, days_180_survival, days_90_aki, days_90_survival, days_to_aki]

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- path: labs[lab_id:submitter_id, lab_name:name_of_institute, PI_name]
- path: follow_ups.demographics[gender, race, ethnicity, year_of_birth, age_at_index]

Expand All @@ -1716,8 +1752,8 @@
type: aggregator
root: molecular_test
parent_props:
- path: follow_ups[follow_up_id:submitter_id, visit_day].cases[pat_id:submitter_id, case_arm:actarm].studies[study_name, study_id:submitter_id]

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- path: follow_ups.cases[pat_id:submitter_id, case_arm:actarm, case_group:cohort, study_site, aki_status, days_180_aki, days_180_survival, days_90_aki, days_90_survival, days_to_aki]

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- path: follow_ups.demographics[gender, race, ethnicity, year_of_birth, age_at_index]
- path: aliquots.labs[lab_id:submitter_id, lab_name:name_of_institute, PI_name]
props:
Expand Down