Re-try PR #115
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Re-try PR #115
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Using profvis to check the computational time for each part of functions. Improve on several way: 1. check_pair_jkeach: instead of checking every pair, we check the upper tri first to reduce the burden. 2. Still some LD checking issue caused the LD-free mode. 3. change matrix multiplication using tcrossprod function
The highlighting feature has been updated to provide greater flexibility in visualization options. In previous versions, additional highlight variables in the colocboost plot could only be displayed as vertical lines by setting add_vertical = TRUE. The updated colocboost_plot function now offers more versatile highlighting capabilities through the new add_highlight = TRUE parameter, which allows users to display highlight variables as either vertical lines or red star markers, providing improved customization for data visualization needs.
To enhance computational efficiency, we pre-calculate LD values for each pair of outcome-specific best parameter updates at each boost update.
For the merged CoS, we recalibrate the CoS variants based on the merged weight. We should recalculate purity for the merged CoS and filter unpured merged CoS.
fix bug for choosing top variable in ucos details
fix fine-mapping one iteration issue
Comment out to avoid running this code here, as we do not have real data files in examples
handle duplication variables - remove one of them
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Using profvis to check the computational time for each part of functions. Improve on several way: