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Simplot-cl 1.0.3#1602

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RaheelSyedAhmed wants to merge 2 commits intoStaPH-B:masterfrom
RaheelSyedAhmed:simplot-cl-1.0.3
Open

Simplot-cl 1.0.3#1602
RaheelSyedAhmed wants to merge 2 commits intoStaPH-B:masterfrom
RaheelSyedAhmed:simplot-cl-1.0.3

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@RaheelSyedAhmed
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Pull Request (PR) checklist:

  • Include a description of what is in this pull request in this message.
  • The dockerfile successfully builds to a test target for the user creating the PR. (i.e. docker build --tag samtools:1.15test --target test docker-builds/build-files/samtools/1.15 )
  • Directory structure as name of the tool in lower case with special characters removed with a subdirectory of the version number in build-files (i.e. docker-builds/build-files/spades/3.12.0/Dockerfile)
    • (optional) All test files are located in same directory as the Dockerfile (i.e. build-files/shigatyper/2.0.1/test.sh)
  • Create a simple container-specific README.md in the same directory as the Dockerfile (i.e. docker-builds/build-files/spades/3.12.0/README.md)
    • If this README is longer than 30 lines, there is an explanation as to why more detail was needed
  • Dockerfile includes the recommended LABELS
  • Main README.md has been updated to include the tool and/or version of the dockerfile(s) in this PR
  • Program_Licenses.md contains the tool(s) used in this PR and has been updated for any missing

This pull request is for a new tool, simplot-cl version 1.0.3. It includes a micromamba based dockerfile with needed dependencies for the main executable, simplot.py to work appropriately. The README.md for v1.0.3. is longer than 30 lines. I found it useful to include formats of files that could be passed as arguments, and having the arguments themselves as well as descriptions of the overall steps and outputs were noted for ease of access. Appropriate details / dropdowns have been made to condense the rendered space.

…implot.py is linked to /usr/local/bin for python path access.
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