A project to reproduce pybind's crash
Python 3.x with Pytorch 1.7+ GCC 7.4.0 or 7.5.0 (4.8.5 does not present this bug, other versions are untested)
To reproduce:
inside pybind_crash folder
bash run.sh
you can provide the directory of your preferred GCC's binaries as argument #1 to run.sh
bash run.sh /usr/local/bin/
(base) [root@1cf9dda33f79 pybind_crash]# bash run.sh
Cloning into 'pybind11'...
remote: Enumerating objects: 23430, done.
remote: Counting objects: 100% (1305/1305), done.
remote: Compressing objects: 100% (520/520), done.
remote: Total 23430 (delta 814), reused 1055 (delta 714), pack-reused 22125
Receiving objects: 100% (23430/23430), 8.57 MiB | 9.30 MiB/s, done.
Resolving deltas: 100% (16238/16238), done.
Updating files: 100% (236/236), done.
-- The C compiler identification is GNU 4.8.5
-- The CXX compiler identification is GNU 4.8.5
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- pybind11 v2.10.0 dev1
-- Found PythonInterp: /deployment/envs/bert_sentiment/bin/python (found suitable version "3.9.7", minimum required is "3.6")
-- Found PythonLibs: /deployment/envs/bert_sentiment/lib/libpython3.9.so
-- Performing Test HAS_FLTO
-- Performing Test HAS_FLTO - Success
-- Configuring done
-- Generating done
-- Build files have been written to: /deployment/pybind_crash/build
make: Warning: File `Makefile' has modification time 0.5 s in the future
make[1]: Warning: File `CMakeFiles/Makefile2' has modification time 0.55 s in the future
make[2]: Warning: File `CMakeFiles/example.dir/flags.make' has modification time 0.4 s in the future
Scanning dependencies of target example
make[2]: warning: Clock skew detected. Your build may be incomplete.
make[2]: Warning: File `CMakeFiles/example.dir/depend.make' has modification time 0.54 s in the future
[ 50%] Building CXX object CMakeFiles/example.dir/main.cpp.o
[100%] Linking CXX executable example
make[2]: warning: Clock skew detected. Your build may be incomplete.
[100%] Built target example
make[1]: warning: Clock skew detected. Your build may be incomplete.
make: warning: Clock skew detected. Your build may be incomplete.
Pybind Version: v2.9.1
Python Version: 3.9.7
Torch Version: 1.10.2
(base) [root@1cf9dda33f79 pybind_crash]# bash run.sh /usr/local/bin/
Cloning into 'pybind11'...
remote: Enumerating objects: 23430, done.
remote: Counting objects: 100% (1305/1305), done.
remote: Compressing objects: 100% (520/520), done.
remote: Total 23430 (delta 814), reused 1055 (delta 714), pack-reused 22125
Receiving objects: 100% (23430/23430), 8.57 MiB | 7.05 MiB/s, done.
Resolving deltas: 100% (16238/16238), done.
Updating files: 100% (236/236), done.
-- The C compiler identification is GNU 7.5.0
-- The CXX compiler identification is GNU 7.5.0
-- Check for working C compiler: /usr/local/bin//gcc
-- Check for working C compiler: /usr/local/bin//gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/local/bin//g++
-- Check for working CXX compiler: /usr/local/bin//g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- pybind11 v2.10.0 dev1
-- Found PythonInterp: /deployment/envs/bert_sentiment/bin/python (found suitable version "3.9.7", minimum required is "3.6")
-- Found PythonLibs: /deployment/envs/bert_sentiment/lib/libpython3.9.so
-- Performing Test HAS_FLTO
-- Performing Test HAS_FLTO - Success
-- Configuring done
-- Generating done
-- Build files have been written to: /deployment/pybind_crash/build
make: Warning: File `Makefile' has modification time 0.49 s in the future
make[1]: Warning: File `CMakeFiles/Makefile2' has modification time 0.53 s in the future
make[2]: Warning: File `CMakeFiles/example.dir/flags.make' has modification time 0.4 s in the future
Scanning dependencies of target example
make[2]: warning: Clock skew detected. Your build may be incomplete.
make[2]: Warning: File `CMakeFiles/example.dir/depend.make' has modification time 0.53 s in the future
[ 50%] Building CXX object CMakeFiles/example.dir/main.cpp.o
[100%] Linking CXX executable example
make[2]: warning: Clock skew detected. Your build may be incomplete.
[100%] Built target example
make[1]: warning: Clock skew detected. Your build may be incomplete.
make: warning: Clock skew detected. Your build may be incomplete.
Pybind Version: v2.9.1
Python Version: 3.9.7
Torch Version: 1.10.2
*** Error in `./example': free(): invalid pointer: 0x00000000039d2e08 ***
======= Backtrace: =========
/lib64/libc.so.6(+0x81329)[0x7ff778fe0329]
./example[0x423d6c]
./example[0x41ff5f]
./example[0x41b26d]
./example[0x416ce6]
./example[0x413392]
./example[0x40913f]
./example[0x412b3e]
./example[0x412c1e]
./example[0x405d7d]
/lib64/libc.so.6(__libc_start_main+0xf5)[0x7ff778f81555]
./example[0x405a89]
======= Memory map: ========
00400000-00442000 r-xp 00000000 00:35 5910974512280736 /deployment/pybind_crash/build/example
00641000-00642000 r--p 00041000 00:35 5910974512280736 /deployment/pybind_crash/build/example
00642000-00643000 rw-p 00042000 00:35 5910974512280736 /deployment/pybind_crash/build/example
00643000-00644000 rw-p 00000000 00:00 0
00b9d000-04388000 rw-p 00000000 00:00 0 [heap]
7ff6e0000000-7ff6e0021000 rw-p 00000000 00:00 0
7ff6e0021000-7ff6e4000000 ---p 00000000 00:00 0
7ff6e5804000-7ff6e5984000 rw-p 00000000 00:00 0
7ff6e5984000-7ff6e598a000 r--p 00000000 00:35 562949953865638 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/json.cpython-39-x86_64-linux-gnu.so
7ff6e598a000-7ff6e5995000 r-xp 00006000 00:35 562949953865638 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/json.cpython-39-x86_64-linux-gnu.so
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7ff6e5999000-7ff6e599a000 ---p 00015000 00:35 562949953865638 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/json.cpython-39-x86_64-linux-gnu.so
7ff6e599a000-7ff6e599b000 r--p 00015000 00:35 562949953865638 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/json.cpython-39-x86_64-linux-gnu.so
7ff6e599b000-7ff6e599c000 rw-p 00016000 00:35 562949953865638 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/json.cpython-39-x86_64-linux-gnu.so
7ff6e59dc000-7ff6e59e8000 r--p 00000000 00:35 562949953865655 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/parsers.cpython-39-x86_64-linux-gnu.so
7ff6e59e8000-7ff6e5a3e000 r-xp 0000c000 00:35 562949953865655 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/parsers.cpython-39-x86_64-linux-gnu.so
7ff6e5a3e000-7ff6e5a4a000 r--p 00062000 00:35 562949953865655 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/parsers.cpython-39-x86_64-linux-gnu.so
7ff6e5a4a000-7ff6e5a4b000 ---p 0006e000 00:35 562949953865655 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/parsers.cpython-39-x86_64-linux-gnu.so
7ff6e5a4b000-7ff6e5a4c000 r--p 0006e000 00:35 562949953865655 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/parsers.cpython-39-x86_64-linux-gnu.so
7ff6e5a4c000-7ff6e5a52000 rw-p 0006f000 00:35 562949953865655 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/parsers.cpython-39-x86_64-linux-gnu.so
7ff6e5a52000-7ff6e5a94000 rw-p 00000000 00:00 0
7ff6e5a94000-7ff6e5a98000 r--p 00000000 00:35 562949953865693 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/testing.cpython-39-x86_64-linux-gnu.so
7ff6e5a98000-7ff6e5aa6000 r-xp 00004000 00:35 562949953865693 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/testing.cpython-39-x86_64-linux-gnu.so
7ff6e5aa6000-7ff6e5aa8000 r--p 00012000 00:35 562949953865693 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/testing.cpython-39-x86_64-linux-gnu.so
7ff6e5aa8000-7ff6e5aa9000 r--p 00013000 00:35 562949953865693 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/testing.cpython-39-x86_64-linux-gnu.so
7ff6e5aa9000-7ff6e5aaa000 rw-p 00014000 00:35 562949953865693 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/testing.cpython-39-x86_64-linux-gnu.so
7ff6e5aaa000-7ff6e5aeb000 rw-p 00000000 00:00 0
7ff6e5b2b000-7ff6e5b6b000 rw-p 00000000 00:00 0
7ff6e5b6b000-7ff6e5b7a000 r--p 00000000 00:35 562949953865611 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/groupby.cpython-39-x86_64-linux-gnu.so
7ff6e5b7a000-7ff6e5c7f000 r-xp 0000f000 00:35 562949953865611 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/groupby.cpython-39-x86_64-linux-gnu.so
7ff6e5c7f000-7ff6e5c96000 r--p 00114000 00:35 562949953865611 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/groupby.cpython-39-x86_64-linux-gnu.so
7ff6e5c96000-7ff6e5c97000 ---p 0012b000 00:35 562949953865611 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/groupby.cpython-39-x86_64-linux-gnu.so
7ff6e5c97000-7ff6e5c98000 r--p 0012b000 00:35 562949953865611 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/groupby.cpython-39-x86_64-linux-gnu.so
7ff6e5c98000-7ff6e5ca3000 rw-p 0012c000 00:35 562949953865611 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/groupby.cpython-39-x86_64-linux-gnu.so
7ff6e5ca3000-7ff6e5d66000 rw-p 00000000 00:00 0
7ff6e5d66000-7ff6e5d6e000 r--p 00000000 00:35 562949953865663 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/reshape.cpython-39-x86_64-linux-gnu.so
7ff6e5d6e000-7ff6e5d98000 r-xp 00008000 00:35 562949953865663 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/reshape.cpython-39-x86_64-linux-gnu.so
7ff6e5d98000-7ff6e5da0000 r--p 00032000 00:35 562949953865663 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/reshape.cpython-39-x86_64-linux-gnu.so
7ff6e5da0000-7ff6e5da1000 ---p 0003a000 00:35 562949953865663 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/reshape.cpython-39-x86_64-linux-gnu.so
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7ff6e5da2000-7ff6e5da6000 rw-p 0003b000 00:35 562949953865663 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/reshape.cpython-39-x86_64-linux-gnu.so
7ff6e5da6000-7ff6e5e27000 rw-p 00000000 00:00 0
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7ff6e5e4f000-7ff6e5e59000 r--p 00000000 00:35 562949953865768 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/window/aggregations.cpython-39-x86_64-linux-gnu.so
7ff6e5e59000-7ff6e5e97000 r-xp 0000a000 00:35 562949953865768 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/window/aggregations.cpython-39-x86_64-linux-gnu.so
7ff6e5e97000-7ff6e5ea0000 r--p 00048000 00:35 562949953865768 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/window/aggregations.cpython-39-x86_64-linux-gnu.so
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7ff6e5fdf000-7ff6e5fe9000 r--p 0003c000 00:35 562949953865629 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/internals.cpython-39-x86_64-linux-gnu.so
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7ff6e5fea000-7ff6e5fef000 rw-p 00046000 00:35 562949953865629 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/internals.cpython-39-x86_64-linux-gnu.so
7ff6e5fef000-7ff6e60b1000 rw-p 00000000 00:00 0
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7ff6e60b4000-7ff6e60b9000 r-xp 00003000 00:35 562949953865627 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/indexing.cpython-39-x86_64-linux-gnu.so
7ff6e60b9000-7ff6e60bb000 r--p 00008000 00:35 562949953865627 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/indexing.cpython-39-x86_64-linux-gnu.so
7ff6e60bb000-7ff6e60bc000 r--p 00009000 00:35 562949953865627 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/indexing.cpython-39-x86_64-linux-gnu.so
7ff6e60bc000-7ff6e60bd000 rw-p 0000a000 00:35 562949953865627 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/indexing.cpython-39-x86_64-linux-gnu.so
7ff6e60bd000-7ff6e617d000 rw-p 00000000 00:00 0
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7ff6e6180000-7ff6e6183000 r-xp 00003000 00:35 562949953865661 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/reduction.cpython-39-x86_64-linux-gnu.so
7ff6e6183000-7ff6e6184000 r--p 00006000 00:35 562949953865661 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/reduction.cpython-39-x86_64-linux-gnu.so
7ff6e6184000-7ff6e6185000 ---p 00007000 00:35 562949953865661 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/reduction.cpython-39-x86_64-linux-gnu.so
7ff6e6185000-7ff6e6186000 r--p 00007000 00:35 562949953865661 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/reduction.cpython-39-x86_64-linux-gnu.so
7ff6e6186000-7ff6e6187000 rw-p 00008000 00:35 562949953865661 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/reduction.cpython-39-x86_64-linux-gnu.so
7ff6e6187000-7ff6e6207000 rw-p 00000000 00:00 0
7ff6e6207000-7ff6e6210000 r--p 00000000 00:35 562949953865666 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/sparse.cpython-39-x86_64-linux-gnu.so
7ff6e6210000-7ff6e62c1000 r-xp 00009000 00:35 562949953865666 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/sparse.cpython-39-x86_64-linux-gnu.so
7ff6e62c1000-7ff6e62cd000 r--p 000ba000 00:35 562949953865666 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/sparse.cpython-39-x86_64-linux-gnu.so
7ff6e62cd000-7ff6e62ce000 ---p 000c6000 00:35 562949953865666 /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/sparse.cpython-39-x86_64-linux-gnu.so
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