eCLIP_Analysis The repo contains list of all tools which were utilised in the Imig lab for analysis of eCLIP-seq data. Preprocessing tools Demultiplexing Trimming and quality checks Alignment Peaks Structure Demux Script for demultiplexing files Analysis_Pipeline Scripts for generating peaks from fastq file as input Requires STAR,samtools,bedtools,piranha,MEME,cutadapt DEWSeq_Scripts Script to prepare input file for DEWSeq Run DEWSeq and generate plots Requires DEWSeq and htseq-clip