Project for the 2024-2025 single cell lecture at TUM, where we will predict vaccination response of individual clones using temporal multimodal single cell data.
Clone this repository via:
git clone git@github.com:SchubertLab/VaccineSimulator.git
access the repository directory and run the following commands to create a conda environment with all initial requirements:
conda env create -f environment.yaml -y && conda activate vaccineSimulator && conda install nb_conda_kernels -y
You can find an introduction to the dataset and project under notebooks/introduction.ipynb