Calculate study timing given sdtm data.
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samussiah
requested review from
bzkrouse,
jwildfire,
nandriychuk and
sjlussier
jwildfire
requested changes
Jan 27, 2023
| getDefaultSettings <- function(standard) { | ||
| settings <- list() | ||
|
|
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| if (standard == 'sdtm') { |
Contributor
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I think we should be able to use safetyGraphics::makeMapping to do this. Let me see if i can get it working.
R/profileApp.R
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Comment on lines
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| ## Calculate study timing. | ||
| if (standard == 'sdtm') { | ||
| data$aes <- getTiming( | ||
| params = list( | ||
| data = data, | ||
| settings = settings, | ||
| standard = standard | ||
| ), | ||
| 'aes', | ||
| domainStartDate = settings$aes$stdt_col, | ||
| domainEndDate = settings$aes$endt_col | ||
| ) | ||
| settings$aes$stdy_col <- paste0(settings$aes$stdt_col, '_dy') | ||
| settings$aes$endy_col <- paste0(settings$aes$endt_col, '_dy') | ||
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| data$labs <- getTiming( | ||
| params = list( | ||
| data = data, | ||
| settings = settings, | ||
| standard = standard | ||
| ), | ||
| 'labs', | ||
| domainDate = settings$labs$dt_col | ||
| ) | ||
| settings$labs$dy_col <- paste0(settings$labs$dt_col, '_dy') |
Contributor
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I think we should treat this more like a utility function. Let's move this to a separate function (getSDTMTiming) and have the user call it before starting the app. That way we can use the day variable in other safetyGraphics modules as well if needed. Something like:
sdtm <- getDefaultData(standard="sdtm") %>% getSDTMTiming
safetyGraphicsApp(data=sdtm)
# or profileApp(data=sdtm)
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Copilot reviewed 4 out of 13 changed files in this pull request and generated no comments.
Files not reviewed (9)
- DESCRIPTION: Language not supported
- R/getDefaultData.R: Language not supported
- R/getDefaultSettings.R: Language not supported
- R/getSDTMTiming.R: Language not supported
- R/getTiming.R: Language not supported
- R/profileApp.R: Language not supported
- data-raw/mapping.R: Language not supported
- data-raw/mapping_adam.csv: Language not supported
- data-raw/mapping_sdtm.csv: Language not supported
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