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* updated version in configs * Removed print statements * Added telephone number in the report for medical information * update version in the configs
Signed-off-by: Ram Sai Nanduri <Ram.Nanduri@skane.se>
Signed-off-by: Ram Sai Nanduri <Ram.Nanduri@skane.se>
* Update report text * Updated changelog and added github workflow for changelog reminder
Signed-off-by: Ram Sai Nanduri <Ram.Nanduri@skane.se>
* Updated Pharmacat module Updated the sub workflow with respect to pharmcat, now the haplotype filtration takes palce first and then ontarget followed by annotation.. * updated annotation output file name * Updated configs, modules and workflows with respect to pharmcat * Added options for the report - extended report, match all the haplotypes not just the top ones, report title * Updated ReadMe and ChangeLog
* fixed pharmat memory bug * Updated Changelog
- refactored the structure of the modules , subworkflows and workflows - based on the input the workflows are selected - removed support for HG19 - draft version of the workflow Things to do - add more support for pharmcat - add suport for cnvs
Signed-off-by: Ram Sai Nanduri <Ram.Nanduri@skane.se>
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