Moving objects preproccesed in R (Seurat-based) to Python (AnnData/Scanpy-based).
This repository contains two simple R functions for transferring your Seurat object to Python:
- By saving as separate matrices.
- By saving with SeuratDisk to a .h5ad file (a HDF5-based AnnData containing file).
And a python notebook for loading your Seurat-derived object to perform SCEPIA analysis.
- Further Python transfer explanation: here
