Skip to content

Conversation

@LudvigOlsen
Copy link

@LudvigOlsen LudvigOlsen commented Dec 11, 2025

Hi Rafeed,

When using 51-1000bp fragment lengths for a low-coverage file, I run into the issue where GC_array becomes all zeros after outlier removal. The current code checks for zero-sum before entering construct_GC_bias() but not after remove_outlier().

This fixes that by returning an array with 1s (like you do for pre-outlier-removal zero-sums).

Best,
Ludvig

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant