Fixes zero-sum issue after outlier removal #2
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Hi Rafeed,
When using 51-1000bp fragment lengths for a low-coverage file, I run into the issue where
GC_arraybecomes all zeros after outlier removal. The current code checks for zero-sum before enteringconstruct_GC_bias()but not afterremove_outlier().This fixes that by returning an array with
1s (like you do for pre-outlier-removal zero-sums).Best,
Ludvig