Fixed a bug causing errors when sending networks from STRING to

Cytoscape for some species.

Author: scaramonche

pom.xml

@@ -18,7 +18,7 @@
 	<packaging>bundle</packaging>
 	<name>${bundle.symbolicName}</name>
 
-	<version>2.1.0</version>
+	<version>2.1.1</version>
 
 	<build>
 		<plugins>

src/main/java/edu/ucsf/rbvi/stringApp/internal/tasks/ProteinQueryTask.java

@@ -120,7 +120,9 @@ public ProteinQueryTask(final StringManager manager) {
 	public void run(TaskMonitor monitor) {
 		monitor.setTitle("STRING Protein Query");
 		Species sp = Species.getSpecies(species);
-		if (taxonID != -1 && !sp.isCustom()) {
+		// if (taxonID != -1 && sp != null && !sp.isCustom()) {
+		// Fallback to species taxonID if species name was not enough to find our species
+		if (sp == null && taxonID != -1) {
 			for (Species s : speciesList) {
 				if (s.getTaxId() == taxonID) {
 					if (!s.toString().equals(species)) {