Removed system output and added latest jar.

Author: scaramonche

src/main/java/edu/ucsf/rbvi/stringApp/internal/io/HttpUtils.java

@@ -103,7 +103,7 @@ public static JSONObject postJSON(String url, Map<String, String> queryMap,
 
 		String args = HttpUtils.getStringArguments(queryMap);
 		manager.info("URL: " + url + "?" + truncate(args));
-		System.out.println("URL: " + url + "?" + truncate(args));
+		// System.out.println("URL: " + url + "?" + truncate(args));
 		// System.out.println("URL: " + url + "?" + args);
 
 		URLConnection connection = null;

src/main/java/edu/ucsf/rbvi/stringApp/internal/tasks/ImportNetworkTaskFactory.java

@@ -49,18 +49,18 @@ public ImportNetworkTaskFactory(final StringNetwork stringNet, final String spec
 
 	public TaskIterator createTaskIterator() {
 		if (stringIds == null) {
-			System.out.println("Calling LoadSpeciesInteractions");
+			//System.out.println("Calling LoadSpeciesInteractions");
 			return new TaskIterator(
 					new LoadSpeciesInteractions(stringNet, speciesName, species, confidence,
 					                            species.getName(),
 					                            useDATABASE, netType));
 		} else if (stringNet.getNetwork() == null) {
-			System.out.println("Calling LoadInteractions");
+			//System.out.println("Calling LoadInteractions");
 			return new TaskIterator(new LoadInteractions(stringNet, speciesName, species,
 			                                             confidence, additionalNodes, stringIds,
 			                                             queryTermMap, netName, useDATABASE, netType));
 		}
-		System.out.println("Calling LoadTermsTask");
+		//System.out.println("Calling LoadTermsTask");
 		return new TaskIterator(new LoadTermsTask(stringNet, speciesName, species, confidence,
 		                                          additionalNodes, stringIds, queryTermMap, useDATABASE, netType));
 	}

src/main/java/edu/ucsf/rbvi/stringApp/internal/utils/ModelUtils.java

@@ -1360,7 +1360,7 @@ private static CyNode createNodeFromStringDb(CyNetwork network, String id, Strin
 		CyRow row = network.getRow(newNode);
 		nodeMap.put(id, newNode);
 
-		System.out.println("Creating node "+id);
+		// System.out.println("Creating node "+id);
 
 		row.set(CyNetwork.NAME, id);
 		// row.set(CyRootNetwork.SHARED_NAME, stringId);