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Unit test needed - mapProbesToGenes with mapToNearest = T

Status: Open.

#71 In QuackenbushLab/NetworkDataCompanion;

· katehoffshutta opened on Apr 4, 2025

gencode update

Status: Open.

#63 In QuackenbushLab/NetworkDataCompanion;

· katehoffshutta opened on Feb 27, 2025

vague message in gene ID conversion

Status: Open.

#62 In QuackenbushLab/NetworkDataCompanion;

· katehoffshutta opened on Feb 21, 2025

Add network-based gene set enrichment analysis

enhancementNew feature or requestNew feature or request

Status: Open.

#59 In QuackenbushLab/NetworkDataCompanion;

· katehoffshutta opened on Feb 21, 2025

could not find function "CreateTCGAPurityFilteringObject"

Status: Open.

#58 In QuackenbushLab/NetworkDataCompanion;

· katehoffshutta opened on Feb 17, 2025

logCPM and logTPM are not coherent

Status: Open.

#48 In QuackenbushLab/NetworkDataCompanion;

· violafanfani opened on May 10, 2024

Support for ignoring NAs of individual probes in mean promoter methylation computation

enhancementNew feature or requestNew feature or request

Status: Open.

#40 In QuackenbushLab/NetworkDataCompanion;

· FischerJoBio opened on Oct 20, 2023

Rds_gene_info with duplicates

Status: Open.

#34 In QuackenbushLab/NetworkDataCompanion;

· soelmicheletti opened on Aug 23, 2023

Gene map ensembl ids are transcripts probeToMeanPromoterMethylation

Status: Open.

#27 In QuackenbushLab/NetworkDataCompanion;

· FischerJoBio opened on Jul 26, 2023

Implement flexible slicing in methylation probe mapping

enhancementNew feature or requestNew feature or request

Status: Open.

#14 In QuackenbushLab/NetworkDataCompanion;

· katehoffshutta opened on Dec 6, 2022